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algorithms kinome regularization kir modeling r script bello  (Addgene inc)


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    Addgene inc algorithms kinome regularization kir modeling r script bello
    Algorithms Kinome Regularization Kir Modeling R Script Bello, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 4 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/algorithms+kinome+regularization+kir+modeling+r+script+bello/pDONR223-DDR2+(Plasmid+%2323897)/pm40975064-292-206-201
    Average 93 stars, based on 4 article reviews
    algorithms kinome regularization kir modeling r script bello - by Bioz Stars, 2026-09
    93/100 stars

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    Related Articles

    Sequencing:

    Article Title: Drug screening in 3D microtumors reveals DDR1/2-MAPK12-GLI1 as a vulnerability in cancer-associated fibroblasts.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER siRNA targeting sequence: MAPK11: GCCCUGAGGUUCUGGCAAA CGACGAGCACGUUCAAUUC CCAUAGACCUCCUUGGAAG GCGCCGACCUGAACAACAU Horizon ON-TARGETplus siRNASMARTpool L-003972-00 siRNA targeting sequence: MAPK12: GAAGCGUGUUACUUACAAA GCGCUAAGGUGGCCAUCAA GCAAGACGCUGUUCAAGGG GGAGACGCCUCUGUGAAGA Horizon ON-TARGETplus siRNASMARTpool L-003590-00 siRNA targeting sequence: MAPK14: GGAAUUCAAUGAUGUGUAU UCUCCGAGGUCUAAAGUAU GUAAUCUAGCUGUGAAUGA GUCCAUCAUUCAUGCGAAA Horizon ON-TARGETplus siRNASMARTpool L-003512-00 siRNA targeting sequence: GLI1: GCAAAUAGGGCUUCACAUA AGGCUCAGCUUGUGUGUAA GGACGAGGGACCUUGCAUU CAGCUAGAGUCCAGAGGUU Horizon ON-TARGETplus siRNASMARTpool L-003896-00 Human PrimePCR SYBR Green Assay Primers for ACTA2 Bio-Rad Unique Assay ID: qHsaCID0013300 Human PrimePCR SYBR Green Assay Primers for COL1A1 Bio-Rad Unique Assay ID: qHsaCED0043248 Human PrimePCR SYBR Green Assay Primers for COL1A2 Bio-Rad Unique Assay ID: qHsaCED0003988 Human PrimePCR SYBR Green Assay Primers for COL5A1 Exon Location: 65 - 66 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.39306346 Human PrimePCR SYBR Green Assay Primers for CXCL12 Exon Location: 3a - 5 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.28013422 Human PrimePCR SYBR Green Assay Primers for DDR1 Bio-Rad Unique Assay ID: qHsaCED0056863 Human PrimePCR SYBR Green Assay Primers for DDR2 Bio-Rad Unique Assay ID: qHsaCID0008789 Human PrimePCR SYBR Green Assay Primers for GLI1 Bio-Rad Unique Assay ID: qHsaCED0043346 Human PrimePCR SYBR Green Assay Primers for IL6 Bio-Rad Unique Assay ID: qHsaCED0044677 Recombinant DNA pcDNA-DEST47-hDDR1 Johannessen et al. 51 Addgene # #23910 pcDNA-DEST47-hDDR2 Johannessen et al. 51 Addgene # #23897 Software and algorithms Kinome regularization (KiR) modeling R script Bello et al. 52 https://github.com/FredHutch/KiRNet- Public R Studio Version 1.2.1335 RStudio Team, 2018 http://www.rstudio.com/ Odyssey imaging analysis software Ver 5.2 LICORbio https://www.licorbio.com/image-studio HistoQuest software 7.0 for Windows version TissueGnostics https://tissuegnostics.com/products/ single-cell-analysis/histoquest ImageJ 1.5j for Windows version National Institutes of Health, Wayne Rasband https://imagej.net/ij/ GraphPad Prism 10 for Windows version 10.4.2 Graphpad Software, Inc. https://www.graphpad.com/ Incuctye ZOOM 2016B Essen Biosciences https://www.essenbioscience.com/ en/products/software/ e3 Cell Reports Medicine 6, 102357, October 21, 2025 OPEN ACCESS

    SYBR Green Assay:

    Article Title: Drug screening in 3D microtumors reveals DDR1/2-MAPK12-GLI1 as a vulnerability in cancer-associated fibroblasts.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER siRNA targeting sequence: MAPK11: GCCCUGAGGUUCUGGCAAA CGACGAGCACGUUCAAUUC CCAUAGACCUCCUUGGAAG GCGCCGACCUGAACAACAU Horizon ON-TARGETplus siRNASMARTpool L-003972-00 siRNA targeting sequence: MAPK12: GAAGCGUGUUACUUACAAA GCGCUAAGGUGGCCAUCAA GCAAGACGCUGUUCAAGGG GGAGACGCCUCUGUGAAGA Horizon ON-TARGETplus siRNASMARTpool L-003590-00 siRNA targeting sequence: MAPK14: GGAAUUCAAUGAUGUGUAU UCUCCGAGGUCUAAAGUAU GUAAUCUAGCUGUGAAUGA GUCCAUCAUUCAUGCGAAA Horizon ON-TARGETplus siRNASMARTpool L-003512-00 siRNA targeting sequence: GLI1: GCAAAUAGGGCUUCACAUA AGGCUCAGCUUGUGUGUAA GGACGAGGGACCUUGCAUU CAGCUAGAGUCCAGAGGUU Horizon ON-TARGETplus siRNASMARTpool L-003896-00 Human PrimePCR SYBR Green Assay Primers for ACTA2 Bio-Rad Unique Assay ID: qHsaCID0013300 Human PrimePCR SYBR Green Assay Primers for COL1A1 Bio-Rad Unique Assay ID: qHsaCED0043248 Human PrimePCR SYBR Green Assay Primers for COL1A2 Bio-Rad Unique Assay ID: qHsaCED0003988 Human PrimePCR SYBR Green Assay Primers for COL5A1 Exon Location: 65 - 66 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.39306346 Human PrimePCR SYBR Green Assay Primers for CXCL12 Exon Location: 3a - 5 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.28013422 Human PrimePCR SYBR Green Assay Primers for DDR1 Bio-Rad Unique Assay ID: qHsaCED0056863 Human PrimePCR SYBR Green Assay Primers for DDR2 Bio-Rad Unique Assay ID: qHsaCID0008789 Human PrimePCR SYBR Green Assay Primers for GLI1 Bio-Rad Unique Assay ID: qHsaCED0043346 Human PrimePCR SYBR Green Assay Primers for IL6 Bio-Rad Unique Assay ID: qHsaCED0044677 Recombinant DNA pcDNA-DEST47-hDDR1 Johannessen et al. 51 Addgene # #23910 pcDNA-DEST47-hDDR2 Johannessen et al. 51 Addgene # #23897 Software and algorithms Kinome regularization (KiR) modeling R script Bello et al. 52 https://github.com/FredHutch/KiRNet- Public R Studio Version 1.2.1335 RStudio Team, 2018 http://www.rstudio.com/ Odyssey imaging analysis software Ver 5.2 LICORbio https://www.licorbio.com/image-studio HistoQuest software 7.0 for Windows version TissueGnostics https://tissuegnostics.com/products/ single-cell-analysis/histoquest ImageJ 1.5j for Windows version National Institutes of Health, Wayne Rasband https://imagej.net/ij/ GraphPad Prism 10 for Windows version 10.4.2 Graphpad Software, Inc. https://www.graphpad.com/ Incuctye ZOOM 2016B Essen Biosciences https://www.essenbioscience.com/ en/products/software/ e3 Cell Reports Medicine 6, 102357, October 21, 2025 OPEN ACCESS

    Recombinant:

    Article Title: Drug screening in 3D microtumors reveals DDR1/2-MAPK12-GLI1 as a vulnerability in cancer-associated fibroblasts.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER siRNA targeting sequence: MAPK11: GCCCUGAGGUUCUGGCAAA CGACGAGCACGUUCAAUUC CCAUAGACCUCCUUGGAAG GCGCCGACCUGAACAACAU Horizon ON-TARGETplus siRNASMARTpool L-003972-00 siRNA targeting sequence: MAPK12: GAAGCGUGUUACUUACAAA GCGCUAAGGUGGCCAUCAA GCAAGACGCUGUUCAAGGG GGAGACGCCUCUGUGAAGA Horizon ON-TARGETplus siRNASMARTpool L-003590-00 siRNA targeting sequence: MAPK14: GGAAUUCAAUGAUGUGUAU UCUCCGAGGUCUAAAGUAU GUAAUCUAGCUGUGAAUGA GUCCAUCAUUCAUGCGAAA Horizon ON-TARGETplus siRNASMARTpool L-003512-00 siRNA targeting sequence: GLI1: GCAAAUAGGGCUUCACAUA AGGCUCAGCUUGUGUGUAA GGACGAGGGACCUUGCAUU CAGCUAGAGUCCAGAGGUU Horizon ON-TARGETplus siRNASMARTpool L-003896-00 Human PrimePCR SYBR Green Assay Primers for ACTA2 Bio-Rad Unique Assay ID: qHsaCID0013300 Human PrimePCR SYBR Green Assay Primers for COL1A1 Bio-Rad Unique Assay ID: qHsaCED0043248 Human PrimePCR SYBR Green Assay Primers for COL1A2 Bio-Rad Unique Assay ID: qHsaCED0003988 Human PrimePCR SYBR Green Assay Primers for COL5A1 Exon Location: 65 - 66 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.39306346 Human PrimePCR SYBR Green Assay Primers for CXCL12 Exon Location: 3a - 5 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.28013422 Human PrimePCR SYBR Green Assay Primers for DDR1 Bio-Rad Unique Assay ID: qHsaCED0056863 Human PrimePCR SYBR Green Assay Primers for DDR2 Bio-Rad Unique Assay ID: qHsaCID0008789 Human PrimePCR SYBR Green Assay Primers for GLI1 Bio-Rad Unique Assay ID: qHsaCED0043346 Human PrimePCR SYBR Green Assay Primers for IL6 Bio-Rad Unique Assay ID: qHsaCED0044677 Recombinant DNA pcDNA-DEST47-hDDR1 Johannessen et al. 51 Addgene # #23910 pcDNA-DEST47-hDDR2 Johannessen et al. 51 Addgene # #23897 Software and algorithms Kinome regularization (KiR) modeling R script Bello et al. 52 https://github.com/FredHutch/KiRNet- Public R Studio Version 1.2.1335 RStudio Team, 2018 http://www.rstudio.com/ Odyssey imaging analysis software Ver 5.2 LICORbio https://www.licorbio.com/image-studio HistoQuest software 7.0 for Windows version TissueGnostics https://tissuegnostics.com/products/ single-cell-analysis/histoquest ImageJ 1.5j for Windows version National Institutes of Health, Wayne Rasband https://imagej.net/ij/ GraphPad Prism 10 for Windows version 10.4.2 Graphpad Software, Inc. https://www.graphpad.com/ Incuctye ZOOM 2016B Essen Biosciences https://www.essenbioscience.com/ en/products/software/ e3 Cell Reports Medicine 6, 102357, October 21, 2025 OPEN ACCESS

    Software:

    Article Title: Drug screening in 3D microtumors reveals DDR1/2-MAPK12-GLI1 as a vulnerability in cancer-associated fibroblasts.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER siRNA targeting sequence: MAPK11: GCCCUGAGGUUCUGGCAAA CGACGAGCACGUUCAAUUC CCAUAGACCUCCUUGGAAG GCGCCGACCUGAACAACAU Horizon ON-TARGETplus siRNASMARTpool L-003972-00 siRNA targeting sequence: MAPK12: GAAGCGUGUUACUUACAAA GCGCUAAGGUGGCCAUCAA GCAAGACGCUGUUCAAGGG GGAGACGCCUCUGUGAAGA Horizon ON-TARGETplus siRNASMARTpool L-003590-00 siRNA targeting sequence: MAPK14: GGAAUUCAAUGAUGUGUAU UCUCCGAGGUCUAAAGUAU GUAAUCUAGCUGUGAAUGA GUCCAUCAUUCAUGCGAAA Horizon ON-TARGETplus siRNASMARTpool L-003512-00 siRNA targeting sequence: GLI1: GCAAAUAGGGCUUCACAUA AGGCUCAGCUUGUGUGUAA GGACGAGGGACCUUGCAUU CAGCUAGAGUCCAGAGGUU Horizon ON-TARGETplus siRNASMARTpool L-003896-00 Human PrimePCR SYBR Green Assay Primers for ACTA2 Bio-Rad Unique Assay ID: qHsaCID0013300 Human PrimePCR SYBR Green Assay Primers for COL1A1 Bio-Rad Unique Assay ID: qHsaCED0043248 Human PrimePCR SYBR Green Assay Primers for COL1A2 Bio-Rad Unique Assay ID: qHsaCED0003988 Human PrimePCR SYBR Green Assay Primers for COL5A1 Exon Location: 65 - 66 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.39306346 Human PrimePCR SYBR Green Assay Primers for CXCL12 Exon Location: 3a - 5 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.28013422 Human PrimePCR SYBR Green Assay Primers for DDR1 Bio-Rad Unique Assay ID: qHsaCED0056863 Human PrimePCR SYBR Green Assay Primers for DDR2 Bio-Rad Unique Assay ID: qHsaCID0008789 Human PrimePCR SYBR Green Assay Primers for GLI1 Bio-Rad Unique Assay ID: qHsaCED0043346 Human PrimePCR SYBR Green Assay Primers for IL6 Bio-Rad Unique Assay ID: qHsaCED0044677 Recombinant DNA pcDNA-DEST47-hDDR1 Johannessen et al. 51 Addgene # #23910 pcDNA-DEST47-hDDR2 Johannessen et al. 51 Addgene # #23897 Software and algorithms Kinome regularization (KiR) modeling R script Bello et al. 52 https://github.com/FredHutch/KiRNet- Public R Studio Version 1.2.1335 RStudio Team, 2018 http://www.rstudio.com/ Odyssey imaging analysis software Ver 5.2 LICORbio https://www.licorbio.com/image-studio HistoQuest software 7.0 for Windows version TissueGnostics https://tissuegnostics.com/products/ single-cell-analysis/histoquest ImageJ 1.5j for Windows version National Institutes of Health, Wayne Rasband https://imagej.net/ij/ GraphPad Prism 10 for Windows version 10.4.2 Graphpad Software, Inc. https://www.graphpad.com/ Incuctye ZOOM 2016B Essen Biosciences https://www.essenbioscience.com/ en/products/software/ e3 Cell Reports Medicine 6, 102357, October 21, 2025 OPEN ACCESS

    Imaging:

    Article Title: Drug screening in 3D microtumors reveals DDR1/2-MAPK12-GLI1 as a vulnerability in cancer-associated fibroblasts.
    Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER siRNA targeting sequence: MAPK11: GCCCUGAGGUUCUGGCAAA CGACGAGCACGUUCAAUUC CCAUAGACCUCCUUGGAAG GCGCCGACCUGAACAACAU Horizon ON-TARGETplus siRNASMARTpool L-003972-00 siRNA targeting sequence: MAPK12: GAAGCGUGUUACUUACAAA GCGCUAAGGUGGCCAUCAA GCAAGACGCUGUUCAAGGG GGAGACGCCUCUGUGAAGA Horizon ON-TARGETplus siRNASMARTpool L-003590-00 siRNA targeting sequence: MAPK14: GGAAUUCAAUGAUGUGUAU UCUCCGAGGUCUAAAGUAU GUAAUCUAGCUGUGAAUGA GUCCAUCAUUCAUGCGAAA Horizon ON-TARGETplus siRNASMARTpool L-003512-00 siRNA targeting sequence: GLI1: GCAAAUAGGGCUUCACAUA AGGCUCAGCUUGUGUGUAA GGACGAGGGACCUUGCAUU CAGCUAGAGUCCAGAGGUU Horizon ON-TARGETplus siRNASMARTpool L-003896-00 Human PrimePCR SYBR Green Assay Primers for ACTA2 Bio-Rad Unique Assay ID: qHsaCID0013300 Human PrimePCR SYBR Green Assay Primers for COL1A1 Bio-Rad Unique Assay ID: qHsaCED0043248 Human PrimePCR SYBR Green Assay Primers for COL1A2 Bio-Rad Unique Assay ID: qHsaCED0003988 Human PrimePCR SYBR Green Assay Primers for COL5A1 Exon Location: 65 - 66 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.39306346 Human PrimePCR SYBR Green Assay Primers for CXCL12 Exon Location: 3a - 5 IDT (Integrated DNA Technologies) Unique Assay ID: Hs.PT.58.28013422 Human PrimePCR SYBR Green Assay Primers for DDR1 Bio-Rad Unique Assay ID: qHsaCED0056863 Human PrimePCR SYBR Green Assay Primers for DDR2 Bio-Rad Unique Assay ID: qHsaCID0008789 Human PrimePCR SYBR Green Assay Primers for GLI1 Bio-Rad Unique Assay ID: qHsaCED0043346 Human PrimePCR SYBR Green Assay Primers for IL6 Bio-Rad Unique Assay ID: qHsaCED0044677 Recombinant DNA pcDNA-DEST47-hDDR1 Johannessen et al. 51 Addgene # #23910 pcDNA-DEST47-hDDR2 Johannessen et al. 51 Addgene # #23897 Software and algorithms Kinome regularization (KiR) modeling R script Bello et al. 52 https://github.com/FredHutch/KiRNet- Public R Studio Version 1.2.1335 RStudio Team, 2018 http://www.rstudio.com/ Odyssey imaging analysis software Ver 5.2 LICORbio https://www.licorbio.com/image-studio HistoQuest software 7.0 for Windows version TissueGnostics https://tissuegnostics.com/products/ single-cell-analysis/histoquest ImageJ 1.5j for Windows version National Institutes of Health, Wayne Rasband https://imagej.net/ij/ GraphPad Prism 10 for Windows version 10.4.2 Graphpad Software, Inc. https://www.graphpad.com/ Incuctye ZOOM 2016B Essen Biosciences https://www.essenbioscience.com/ en/products/software/ e3 Cell Reports Medicine 6, 102357, October 21, 2025 OPEN ACCESS



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    Addgene inc algorithms kinome regularization kir modeling r script bello
    Algorithms Kinome Regularization Kir Modeling R Script Bello, supplied by Addgene inc, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/algorithms+kinome+regularization+kir+modeling+r+script+bello/pDONR223-DDR2+(Plasmid+%2323897)/pm40975064-292-206-201
    Average 93 stars, based on 1 article reviews
    algorithms kinome regularization kir modeling r script bello - by Bioz Stars, 2026-09
    93/100 stars
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